EMBL Advanced Course: Next Generation Sequencing Data Analysis
Course - Heidelberg, Germany
The large amounts of data derived from next generation sequencing projects makes efficient data mining strategies necessary. In the course you will learn strategies for the analysis of mRNA-Seq data as well as analysis pipelines for ChIP-Seq. These strategies include:
high efficiency mapping of raw sequence tags
clustering of sequence tags
data integration into up to date genome annotation
down stream analysis of tag covered regions
The course is based on real world examples. In the course you will use the Genomatix system for data analysis, which provides a graphical user interface. We will show the possibilities for comparative expression analysis, splice variant detection and discovery of new transcriptional units. In addition the down stream biological mining of enriched regions from ChIP-Seq will be demonstrated. This will focus on transcription factor (TF) analysis in terms of TF overrepresentation in enriched regions and the discovery of functional motifs and patterns of TFs. New insights into biological mechanisms can be gained by overlaying data from different experiment types.
(Courtesy of EMBL building, Heidelberg, via microplate-readers.blogspot.com)
EMBL Advanced Course: Next Generation Sequencing Data Analysis
Tuesday, 23 April - Thursday, 25 April 2013
EMBL Advanced Training Centre, Meyerhofstraße 1, Heidelberg, Germany
If you'd like to ask a question or post a comment about this talk please do so below.
This seminar posting is brought to you by Biotechnology Calendar, Inc. providing access to research information and research tools for nearly 20 years. Visit our Science Market Update Blog for current science funding and market information or see our schedule of upcoming science research laboratory product shows.
